Roi Mask To Mat File Standard Aal Brain

Then i went to the sliceviewer in rest and entered specific coordinates x y z in which i am interested in the sliceviewer to create a roi file. This is a copy of one of the aal structural rois. Since you used the standard brain image in fsl i am not sure how i can match the mask generated from the standard brain image to the actual brain image scanned by mri.

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